Basic Information
Locus ID:
CH01.4955
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosomal protein S10p/S20e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 49891304 | 49892701 | - | CH01.4955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 13,829.00 Da | 32.39 | 105.87 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 28 | 122 | 3.0E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 26 | 123 | 2.62E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 13 | 125 | 3.8E-47 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 28 | 122 | 3.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 26 | 123 | 1.7E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 83 | 97 | 5.9E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 61 | 76 | 5.9E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 26 | 39 | 5.9E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 24 | 123 | 18.211569 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 1.63E-63 |
| RefSeq | XP_014661210.1 | 40S ribosomal protein S20-2 [Setaria italica] | 4.52E-83 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 1.26E-62 | |
| TrEMBL | K4AGM8 | Ribosomal_S10 domain-containing protein OS=Setaria italica OX=4555 GN=101763112 PE=3 SV=1 | 1.02E-81 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology