halophFGD

Basic Information

Locus ID: CH01.4944

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: NTMC2T4.2

Description: Synaptotagmin-like mitochondrial-lipid-binding domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH01	49831734	49834921	+	CH01.4944

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.01	57,529.62 Da	30.98	97.86	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00030	C2	286	381	3.83501E-28	-
Pfam	PF00168	C2 domain	284	381	6.0E-22	IPR000008
Pfam	PF17047	Synaptotagmin-like mitochondrial-lipid-binding domain	89	268	2.1E-16	IPR039010
SUPERFAMILY	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	282	412	1.44E-29	IPR035892
Gene3D	G3DSA:2.60.40.150	C2 domain	268	441	1.8E-30	IPR035892
SMART	SM00239	C2_3c	285	383	1.5E-20	IPR000008
ProSiteProfiles	PS50004	C2 domain profile.	267	386	21.84833	IPR000008
ProSiteProfiles	PS51847	Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile.	87	269	23.865305	IPR031468
PRINTS	PR00360	C2 domain signature	301	313	3.4E-5	IPR000008
PRINTS	PR00360	C2 domain signature	348	356	3.4E-5	IPR000008
PRINTS	PR00360	C2 domain signature	326	339	3.4E-5	IPR000008

Gene Ontology

Molecular Function:

GO:0008289 (lipid binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G61050.1	Calcium-dependent lipid-binding (CaLB domain) family protein.	4.85E-194
RefSeq	XP_034572500.1	synaptotagmin-5-like [Setaria viridis]	5.77E-267
Swiss-Prot	Q9LEX1	Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1	4.66E-193
TrEMBL	A0A4U6T5N6	Synaptotagmin-5 OS=Setaria viridis OX=4556 GN=SEVIR_9G471500v2 PE=3 SV=1	1.3E-265

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg1853, jg1855, jg24021, jg26840, jg29281, jg31611, jg7967
Aizoaceae	Mesembryanthemum crystallinum	3	gene_23253, gene_25203, gene_8952
Amaranthaceae	Atriplex hortensis	3	Ah014275, Ah023124, Ah034772
Amaranthaceae	Beta vulgaris	2	BVRB_2g030700, BVRB_8g193420
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21130, Sbi_jg22665, Sbi_jg25572, Sbi_jg4373 ... Sbi_jg49452, Sbi_jg9394
Amaranthaceae	Salicornia europaea	3	Seu_jg16550, Seu_jg19220, Seu_jg5790
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000329, GOSA_00011031, GOSA_00016254
Amaranthaceae	Suaeda glauca	8	Sgl11226, Sgl13035, Sgl16621, Sgl18263, Sgl41941, Sgl46733 ... Sgl62344, Sgl66881
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000011834, gene:ENSEOMG00000013665 ... gene:ENSEOMG00000019699, gene:ENSEOMG00000020616, gene:ENSEOMG00000032497, gene:ENSEOMG00000033238, gene:ENSEOMG00000044724, gene:ENSEOMG00000048863, gene:ENSEOMG00000051238
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0005920, CQ.Regalona.r1.1BG0021500 ... CQ.Regalona.r1.2AG0023260, CQ.Regalona.r1.2BG0023810, CQ.Regalona.r1.8AG0022620, CQ.Regalona.r1.8BG0019800
Anacardiaceae	Pistacia vera	3	pistato.v30003310, pistato.v30250350, pistato.v30261630
Apiaceae	Apium graveolens	3	Ag10G00322, Ag6G01644, Ag7G01908
Arecaceae	Cocos nucifera	6	COCNU_01G018290, COCNU_01G018300, COCNU_07G008830 ... COCNU_10G006860, COCNU_11G007980, scaffold013686G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103702905, gene-LOC103706481, gene-LOC103708196 ... gene-LOC103711477, gene-LOC103715900, gene-LOC103715911, gene-LOC120109152
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.116.V1.1, AsparagusV1_04.1872.V1.1 ... AsparagusV1_04.2241.V1.1, AsparagusV1_07.819.V1.1, AsparagusV1_08.1575.V1.1, AsparagusV1_10.208.V1.1
Asteraceae	Flaveria trinervia	6	Ftri14G31530, Ftri15G18830, Ftri16G19596, Ftri5G25399 ... Ftri7G01782, Ftri7G03166
Brassicaceae	Arabidopsis thaliana	5	AT1G05500.1, AT3G60950.1, AT3G61030.1, AT3G61050.1 ... AT5G11100.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005905m.g.v1.0, Thhalv10007226m.g.v1.0 ... Thhalv10013100m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g04370.v2.2, Sp5g02310.v2.2, Sp6g32400.v2.2
Brassicaceae	Brassica nigra	5	BniB03g001340.2N, BniB05g026260.2N, BniB06g045040.2N ... BniB06g053410.2N, BniB06g062230.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0460, Ceq04G2373, Ceq06G1450
Casuarinaceae	Casuarina glauca	3	Cgl02G0489, Cgl04G2576, Cgl06G1512
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g03550, gene.Cymno15g04730
Dunaliellaceae	Dunaliella salina	1	Dusal.1289s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g04510, gene.Thate02g03310, gene.Thate05g01680 ... gene.Thate07g11430, gene.Thate07g11440
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9483
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.219, evm.TU.LG07.1471, evm.TU.LG07.1472 ... evm.TU.LG07.600
Plantaginaceae	Plantago ovata	3	Pov_00001116, Pov_00016804, Pov_00018156
Plumbaginaceae	Limonium bicolor	7	Lb0G37702, Lb1G02997, Lb1G02998, Lb1G03809, Lb2G10535 ... Lb2G10542, Lb6G32031
Poaceae	Echinochloa crus-galli	12	AH01.4325, AH03.897, AH08.998, AH09.2491, BH01.4648 ... BH03.1029, BH08.1094, BH09.2711, CH01.4944, CH03.1185, CH08.1175, CH09.2909
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0241280, gene-QOZ80_3BG0286810 ... gene-QOZ80_4AG0301800, gene-QOZ80_4BG0332540, gene-QOZ80_7AG0564210, gene-QOZ80_8AG0625840, gene-QOZ80_8BG0654690
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0146160.1, HORVU.MOREX.r3.2HG0205390.1 ... HORVU.MOREX.r3.4HG0391490.1, HORVU.MOREX.r3.6HG0555000.1
Poaceae	Lolium multiflorum	4	gene-QYE76_032184, gene-QYE76_035748, gene-QYE76_069502 ... gene-QYE76_071132
Poaceae	Oryza coarctata	6	Oco05G008320, Oco06G008600, Oco07G017390, Oco08G016800 ... Oco13G005990, Oco15G005890
Poaceae	Oryza sativa	4	LOC_Os03g14700.1, LOC_Os04g55220.1, LOC_Os07g22640.1 ... LOC_Os08g20544.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G416500, gene-BS78_02G080200 ... gene-BS78_06G249500, gene-BS78_06G256900, gene-BS78_07G125400
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102063, Pt_Chr0102084, Pt_Chr0300729, Pt_Chr0300784 ... Pt_Chr0303948
Poaceae	Sporobolus alterniflorus	10	Chr01G029640, Chr12G009890, Chr16G012520, Chr17G011830 ... Chr23G002530, Chr24G005920, Chr25G002060, Chr26G016820, Chr28G005580, Chr30G002040
Poaceae	Thinopyrum elongatum	5	Tel1E01G001100, Tel2E01G432200, Tel2E01G877200 ... Tel4E01G387400, Tel6E01G223600
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG034640, gene_TRIDC2AG072570 ... gene_TRIDC2BG037620, gene_TRIDC2BG078770, gene_TRIDC4AG011140, gene_TRIDC4BG039370, gene_TRIDC6AG012790, gene_TRIDC6BG017910
Poaceae	Triticum aestivum	11	TraesCS2A02G244800.1, TraesCS2A02G517200.1 ... TraesCS2B02G262400.1, TraesCS2B02G545700.3, TraesCS2D02G242600.1, TraesCS2D02G518800.1, TraesCS4A02G081200.1, TraesCS4B02G222600.1, TraesCS4D02G223100.1, TraesCS6A02G098900.2, TraesCS6D02G083600.2
Poaceae	Zea mays	4	Zm00001eb010800_P002, Zm00001eb068630_P001 ... Zm00001eb110300_P001, Zm00001eb305750_P002
Poaceae	Zoysia japonica	7	nbis-gene-2242, nbis-gene-22999, nbis-gene-3869 ... nbis-gene-38847, nbis-gene-41988, nbis-gene-45886, nbis-gene-6012
Poaceae	Zoysia macrostachya	5	Zma_g1632, Zma_g20547, Zma_g22088, Zma_g22789, Zma_g6304
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2481, evm.TU.LG04.2373, evm.TU.LG10.1627 ... evm.TU.LG17.1521, evm.TU.LG18.392, evm.TU.LG19.1187, evm.TU.LG24.1190, evm.TU.LG26.646
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g04360, gene.Posoc07g06610
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.864, evm.TU.Scaffold_4_RagTag.2279 ... evm.TU.Scaffold_5_RagTag.346
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10917, nbisL1-mrna-13610, nbisL1-mrna-25189
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15124, nbisL1-mrna-17169, nbisL1-mrna-3417
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10469, nbisL1-mrna-5018, nbisL1-mrna-9117
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.182, evm.TU.utg000006l.525 ... evm.TU.utg000008l.1333
Rhizophoraceae	Kandelia obovata	4	Maker00000374, Maker00004116, Maker00004195, Maker00013966
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1850, nbisL1-mrna-3763, nbisL1-mrna-9244
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-22302, nbisL1-mrna-6968, nbisL1-mrna-7847
Salicaceae	Populus euphratica	5	populus_peu04741, populus_peu05708, populus_peu11089 ... populus_peu27815, populus_peu31751
Solanaceae	Lycium barbarum	6	gene-LOC132603116, gene-LOC132632957, gene-LOC132636157 ... gene-LOC132636982, gene-LOC132640623, gene-LOC132645624
Solanaceae	Solanum chilense	7	SOLCI000496900, SOLCI001205500, SOLCI003500500 ... SOLCI003627700, SOLCI005585900, SOLCI007132900, SOLCI007529200
Solanaceae	Solanum pennellii	6	gene-LOC107001825, gene-LOC107007373, gene-LOC107007923 ... gene-LOC107019114, gene-LOC107025848, gene-LOC107028030
Tamaricaceae	Reaumuria soongarica	3	STRG.12226_chr02_+, gene_1484, gene_18207
Tamaricaceae	Tamarix chinensis	3	TC02G0537, TC03G2707, TC10G1195
Zosteraceae	Zostera marina	6	Zosma01g32540.v3.1, Zosma02g06130.v3.1, Zosma05g13070.v3.1 ... Zosma06g05410.v3.1, Zosma06g25720.v3.1, Zosma1308g00020.v3.1