Basic Information
Locus ID:
CH01.4928
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 49677467 | 49684284 | + | CH01.4928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 124,710.92 Da | 42.48 | 79.40 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 485 | 9.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 946 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 829 | 1091 | 6.18E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 661 | 8.55E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 689 | 1.0E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 957 | 1113 | 1.9E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 320 | 541 | 4.2E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 733 | 956 | 2.3E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 907 | 946 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 997 | 1038 | 9.1 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 962 | 994 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 864 | 904 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 861 | 47.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-12 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 914 | 946 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 914 | 946 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 495 | 9.840087 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5I9 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology