Basic Information
Locus ID:
CH01.4844
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 49055880 | 49057172 | - | CH01.4844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 43,906.13 Da | 46.24 | 97.19 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 71 | 6.8E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 127 | 173 | 7.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 102 | 393 | 1.36E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 397 | 3.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 207 | 1.8E-27 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 430 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 4.05E-38 |
| RefSeq | XP_004965417.1 | probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Setaria italica] | 7.58E-227 |
| TrEMBL | K3XX40 | LRRNT_2 domain-containing protein OS=Setaria italica OX=4555 GN=101783631 PE=4 SV=1 | 1.71E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology