Basic Information
Locus ID:
CH01.4829
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 48979218 | 48982414 | + | CH01.4829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 57,527.90 Da | 60.95 | 67.53 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 140 | 192 | 1.15017E-25 | - |
| Pfam | PF00412 | LIM domain | 140 | 194 | 7.1E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 289 | 502 | 2.0E-101 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 166 | 220 | 2.32E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 165 | 3.77E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 127 | 198 | 1.5E-12 | - |
| SMART | SM00726 | uim | 74 | 93 | 18.0 | IPR003903 |
| SMART | SM00726 | uim | 103 | 122 | 27.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 139 | 191 | 1.3E-9 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 138 | 198 | 11.395 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 140 | 174 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 1.48E-205 |
| RefSeq | XP_039826894.1 | protein DA1-related 2-like isoform X1 [Panicum virgatum] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 3.23E-310 | |
| TrEMBL | A0A8T0MZ65 | LIM zinc-binding domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG705400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology