Basic Information
Locus ID:
CH01.4676
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 47619861 | 47625448 | - | CH01.4676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 164,982.00 Da | 40.14 | 103.02 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 320 | 607 | 6.91148E-100 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 633 | 833 | 7.20941E-114 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1258 | 1478 | 2.81368E-117 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 941 | 1235 | 1.86185E-95 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 323 | 586 | 1.2E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 943 | 1187 | 6.3E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 651 | 785 | 1.9E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1277 | 1425 | 7.5E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 308 | 607 | 3.27E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 939 | 1241 | 1.7E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1250 | 1491 | 5.33E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 630 | 855 | 3.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1245 | 1496 | 2.0E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 615 | 8.7E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 904 | 1241 | 8.9E-64 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 619 | 868 | 1.1E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 660 | 833 | 1.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1286 | 1478 | 9.6E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 633 | 856 | 23.236065 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1260 | 1494 | 16.913568 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 319 | 599 | 29.760714 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 943 | 1223 | 37.731384 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 758 | 772 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 904 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_025798382.1 | ABC transporter C family member 3-like [Panicum hallii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CE68 | ABC transporter C family member 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G518300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology