Basic Information
Locus ID:
CH01.4612
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 47044981 | 47047566 | + | CH01.4612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 64,951.38 Da | 33.88 | 87.45 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 409 | 591 | 8.24882E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 50 | 211 | 1.09905E-91 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 244 | 353 | 6.5E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 454 | 579 | 4.5E-13 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 48 | 217 | 2.9E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 47 | 226 | 2.31E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 233 | 386 | 2.03E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 409 | 603 | 1.97E-39 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 234 | 396 | 3.0E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 44 | 220 | 8.5E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 403 | 590 | 5.1E-55 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 42 | 603 | 1.0E-210 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_004984863.1 | pyruvate decarboxylase 2 [Setaria italica] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6SAD6 | pyruvate decarboxylase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G29240 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology