Basic Information
Locus ID:
CH01.4321
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 44674351 | 44674956 | - | CH01.4321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 20,428.12 Da | 46.23 | 85.62 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 4.63619E-18 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 185 | 1.14E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 188 | 7.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 181 | 8.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 12.858103 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 3.35E-20 |
| RefSeq | XP_039781396.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 1.45E-78 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 3.27E-19 | |
| TrEMBL | A0A1E5VRH4 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011296 PE=4 SV=1 | 1.42E-84 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology