Basic Information
Locus ID:
CH01.4319
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 44638387 | 44639012 | - | CH01.4319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 19,103.12 Da | 39.29 | 63.17 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 122 | 166 | 3.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 171 | 1.79E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 170 | 4.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 165 | 0.0016 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 166 | 10.084539 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 6.76E-12 |
| RefSeq | XP_004987002.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 1.85E-33 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 6.72E-11 | |
| TrEMBL | K4AJF1 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 PE=4 SV=1 | 4.08E-32 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4645 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4054, CH01.4319 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0247630, gene-QOZ80_7AG0581660 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0112830.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018681, gene-QYE76_038791, gene-QYE76_068013 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g02260.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G019650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G235300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G109000.1.cds1, TraesCS2B02G126700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb016280_P001, Zm00001eb111410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-103, nbis-gene-1626 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1237, Zma_g7070 |