Basic Information
Locus ID:
CH01.4314
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
60S ribosomal protein L18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 44595148 | 44597431 | + | CH01.4314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.35 | 21,041.50 Da | 38.07 | 84.44 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 187 | 3.9E-95 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 139 | 4.58E-26 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 187 | 1.9E-100 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 50 | 67 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 4.01E-112 |
| RefSeq | XP_002465302.1 | 60S ribosomal protein L18-3 [Sorghum bicolor] | 5.59E-127 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 3.85E-111 | |
| TrEMBL | A0A1Z5S9X6 | Ribosomal_L18e/L15P domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G377800 PE=3 SV=1 | 1.26E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology