Basic Information
Locus ID:
CH01.4259
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 44156034 | 44161176 | + | CH01.4259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 44,790.66 Da | 43.26 | 79.47 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 164 | 208 | 8.47569E-14 | - |
| Pfam | PF13639 | Ring finger domain | 163 | 207 | 1.7E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 212 | 266 | 1.3E-12 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 158 | 5.75E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 215 | 2.77E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 226 | 9.4E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 234 | 275 | 3.3E-10 | - |
| SMART | SM00184 | ring_2 | 165 | 207 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 164 | 33.819908 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 208 | 11.722122 | IPR001841 |
| Coils | Coil | Coil | 315 | 335 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 1.95E-66 |
| RefSeq | XP_022679116.1 | E3 ubiquitin-protein ligase SRFP1 isoform X1 [Setaria italica] | 2.07E-126 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 1.32E-110 | |
| TrEMBL | K4AE18 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101763657 PE=4 SV=1 | 4.68E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology