Basic Information
Locus ID:
CH01.425
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 3097325 | 3101670 | - | CH01.425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 70,050.70 Da | 49.63 | 91.90 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 190 | 386 | 5.1E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 58 | 6.8E-8 | IPR036047 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 8.623154 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 611 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004981468.1 | uncharacterized protein LOC101783491 [Setaria italica] | 1.62E-238 |
| TrEMBL | K4A816 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=101783491 PE=4 SV=1 | 3.67E-237 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH01.175, BH03.1193, BH03.3926, BH03.3928, BH05.3403 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0211990, gene-QOZ80_3AG0212950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061269 |
| Poaceae | Oryza coarctata | 2 | Oco06G002870, Oco06G003350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G249800, Tel5E01G674400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG024010, gene_TRIDC5AG055580 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS5A02G142800.1, TraesCS5A02G380200.1 ... |