Basic Information
Locus ID:
CH01.4245
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 44047916 | 44050424 | + | CH01.4245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 58,724.79 Da | 66.85 | 55.79 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 443 | 484 | 4.44661E-24 | - |
| Pfam | PF13639 | Ring finger domain | 442 | 484 | 5.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 262 | 293 | 1.3E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 424 | 490 | 9.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 406 | 490 | 3.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 443 | 483 | 1.6E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 232 | 285 | 19.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 443 | 484 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 8.48E-79 |
| RefSeq | XP_039828770.1 | probable E3 ubiquitin-protein ligase RHC1A [Panicum virgatum] | 6.92E-185 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 8.18E-78 | |
| TrEMBL | A0A8T0MU89 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9NG593000 PE=4 SV=1 | 1.57E-183 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology