Basic Information
Locus ID:
CH01.424
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 3081156 | 3083452 | - | CH01.424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 58,130.15 Da | 52.42 | 94.24 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 44 | 78 | 4.6E-5 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 220 | 411 | 6.35E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 85 | 2.22E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 81 | 6.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 204 | 439 | 3.6E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 42 | 89 | 9.841896 | IPR001810 |
| Coils | Coil | Coil | 98 | 118 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29830.2 | - | 4.92E-8 |
| RefSeq | XP_015611838.1 | F-box/FBD/LRR-repeat protein At1g16930 [Oryza sativa Japonica Group] | 1.59E-272 |
| Q9LJ48 | Putative F-box protein At3g29830 OS=Arabidopsis thaliana OX=3702 GN=At3g29830 PE=4 SV=1 | 4.89E-7 | |
| TrEMBL | B9EYD5 | Os01g0653700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0653700 PE=4 SV=1 | 3.59E-271 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH01.175, BH03.1193, BH03.3926, BH03.3928, BH05.3403 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0211990, gene-QOZ80_3AG0212950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061269 |
| Poaceae | Oryza coarctata | 2 | Oco06G002870, Oco06G003350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G249800, Tel5E01G674400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG024010, gene_TRIDC5AG055580 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS5A02G142800.1, TraesCS5A02G380200.1 ... |