Basic Information
Locus ID:
CH01.4222
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43846408 | 43855675 | + | CH01.4222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 199,868.75 Da | 44.32 | 80.23 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 829 | 923 | 2.71306E-12 | - |
| CDD | cd09279 | RNase_HI_like | 1527 | 1604 | 5.84051E-27 | - |
| CDD | cd01647 | RT_LTR | 1167 | 1347 | 5.07415E-81 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1185 | 1347 | 7.9E-22 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1412 | 1470 | 5.4E-11 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 1531 | 1621 | 5.9E-12 | IPR002156 |
| Pfam | PF13460 | NAD(P)H-binding | 197 | 262 | 1.4E-7 | IPR016040 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 190 | 258 | 5.84E-10 | IPR036291 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1127 | 1490 | 2.11E-110 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 827 | 928 | 3.56E-9 | IPR021109 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1526 | 1631 | 4.71E-14 | IPR012337 |
| Gene3D | G3DSA:3.30.70.270 | - | 1210 | 1347 | 8.6E-62 | IPR043128 |
| Gene3D | G3DSA:3.40.50.720 | - | 181 | 295 | 3.2E-10 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1128 | 1272 | 8.6E-62 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1528 | 1680 | 1.9E-18 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1357 | 1440 | 9.9E-20 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 810 | 942 | 4.9E-17 | IPR021109 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1523 | 1682 | 12.955235 | IPR002156 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1165 | 1347 | 9.470088 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 184 | - | - |
| Coils | Coil | Coil | 672 | 692 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31530.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 7.8E-24 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 8.86E-222 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 1.53E-41 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |