Basic Information
Locus ID:
CH01.4217
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43825419 | 43828329 | + | CH01.4217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 47,194.29 Da | 54.32 | 61.38 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 163 | 201 | 9.27764E-15 | - |
| CDD | cd03829 | Sina | 279 | 407 | 1.48831E-62 | - |
| Pfam | PF03145 | Seven in absentia protein family | 207 | 406 | 1.1E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 206 | 1.18E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 218 | 410 | 4.77E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 217 | 2.6E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 272 | 8.2E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 273 | 406 | 3.8E-38 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 218 | 278 | 14.287903 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 201 | 9.317383 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 91 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 1.39E-168 |
| RefSeq | XP_008674747.2 | uncharacterized protein LOC100170243 isoform X1 [Zea mays] | 6.24E-236 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 5.07E-222 | |
| TrEMBL | K4AD38 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101778124 PE=3 SV=1 | 2.99E-228 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology