Basic Information
Locus ID:
CH01.4207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43752061 | 43765832 | + | CH01.4207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 113,608.92 Da | 50.90 | 72.29 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 33 | 132 | 3.84918E-12 | - |
| CDD | cd00159 | RhoGAP | 193 | 332 | 6.94386E-32 | - |
| Pfam | PF00620 | RhoGAP domain | 193 | 337 | 1.6E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 620 | 700 | 2.7E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 32 | 136 | 2.7E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 26 | 143 | 5.48E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 193 | 386 | 1.49E-32 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 163 | 386 | 1.5E-40 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 22 | 138 | 2.3E-17 | IPR011993 |
| SMART | SM00233 | PH_update | 31 | 139 | 3.9E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 190 | 381 | 4.9E-25 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 30 | 137 | 15.5261 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 184 | 384 | 30.396862 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 568 | - | - |
| Coils | Coil | Coil | 825 | 845 | - | - |
| Coils | Coil | Coil | 669 | 703 | - | - |
| Coils | Coil | Coil | 578 | 605 | - | - |
| Coils | Coil | Coil | 610 | 644 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_025794933.1 | rho GTPase-activating protein 7-like isoform X2 [Panicum hallii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7CCH6 | Rho GTPase-activating protein 7-like OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G471200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology