halophFGD

Basic Information

Locus ID: CH01.4204

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH01	43731407	43738159	+	CH01.4204

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.97	153,275.36 Da	56.78	73.10	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13976	GAG-pre-integrase domain	1008	1055	1.2E-11	IPR025724
Pfam	PF14223	gag-polypeptide of LTR copia-type	566	695	1.9E-8	-
SUPERFAMILY	SSF50978	WD40 repeat-like	60	316	1.33E-38	IPR036322
SUPERFAMILY	SSF53098	Ribonuclease H-like	1069	1175	2.43E-22	IPR012337
Gene3D	G3DSA:3.30.420.10	-	1027	1175	2.0E-20	IPR036397
Gene3D	G3DSA:2.130.10.10	-	1	321	5.8E-83	IPR015943
SMART	SM00320	WD40_4	115	155	3.8E-4	IPR001680
SMART	SM00320	WD40_4	54	102	210.0	IPR001680
SMART	SM00320	WD40_4	167	205	0.76	IPR001680
SMART	SM00320	WD40_4	255	295	1.5E-6	IPR001680
SMART	SM00320	WD40_4	209	251	3.2	IPR001680
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1071	1166	13.01376	IPR001584
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	262	304	10.007177	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	122	164	10.70896	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	122	158	8.940149	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1405	1444	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	755	785	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	345	380	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	704	787	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1325	1346	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	719	738	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1316	1444	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1383	1397	-	-
Coils	Coil	Coil	422	463	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G63460.3	transducin family protein / WD-40 repeat family protein.	6.43E-90
RefSeq	XP_021320624.1	uncharacterized protein LOC110437007 [Sorghum bicolor]	2.3E-266
Swiss-Prot	Q8L611	Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1	7.23E-89
TrEMBL	A0A0A9AQB4	Integrase catalytic domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1	3.03E-219

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... Sbi_jg5628, Sbi_jg58328, Sbi_jg60530, Sbi_jg61478, Sbi_jg63342, Sbi_jg8665, Sbi_jg9642
Amaranthaceae	Salicornia europaea	3	Seu_jg13583, Seu_jg220, Seu_jg24372
Amaranthaceae	Suaeda glauca	22	Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... Sgl28247, Sgl28348, Sgl34681, Sgl35523, Sgl40897, Sgl43954, Sgl43993, Sgl48719, Sgl48762, Sgl51791, Sgl52022, Sgl53267, Sgl54094, Sgl55419, Sgl57325, Sgl58530
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000004351, gene:ENSEOMG00000049261
Anacardiaceae	Pistacia vera	1	pistato.v30096180
Asteraceae	Flaveria trinervia	1	Ftri3G03871
Brassicaceae	Schrenkiella parvula	1	Sp7g03155.v2.2
Brassicaceae	Brassica nigra	13	BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... BniB02g033300.2N, BniB04g047250.2N, BniB04g052240.2N, BniB05g063000.2N, BniB06g045160.2N, BniB07g001750.2N, BniB07g029480.2N, BniB07g034250.2N, BniB07g043950.2N, BniB08g017720.2N
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15590, gene.Thate06g10480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7277
Plantaginaceae	Plantago ovata	7	Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... Pov_00031130, Pov_00035796, Pov_00041323
Plumbaginaceae	Limonium bicolor	2	Lb1G00201, Lb1G06209
Poaceae	Echinochloa crus-galli	3	CH01.4204, CH02.4285, CH02.754
Poaceae	Lolium multiflorum	23	gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... gene-QYE76_009560, gene-QYE76_012081, gene-QYE76_012926, gene-QYE76_013696, gene-QYE76_016216, gene-QYE76_022787, gene-QYE76_024878, gene-QYE76_025602, gene-QYE76_025751, gene-QYE76_034510, gene-QYE76_038282, gene-QYE76_053921, gene-QYE76_054335, gene-QYE76_055424, gene-QYE76_057980, gene-QYE76_059298, gene-QYE76_062503, gene-QYE76_064015, gene-QYE76_066038, gene-QYE76_071481
Poaceae	Oryza coarctata	7	Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... Oco09G006540, Oco16G006370, Oco22G008980
Poaceae	Sporobolus alterniflorus	24	Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... Chr07G010460, Chr07G013140, Chr08G012100, Chr08G012270, Chr09G005120, Chr12G015710, Chr13G016330, Chr15G017680, Chr16G013230, Chr17G009520, Chr17G009530, Chr18G003390, Chr21G013910, Chr24G013840, Chr25G010030, Chr25G010040, Chr25G014830, Chr25G014840, Chr29G009710, Chr30G014440
Poaceae	Zoysia japonica	7	nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... nbis-gene-5120, nbis-gene-56072, nbis-gene-58384, nbis-gene-58844
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g29300
Solanaceae	Solanum pennellii	1	gene-LOC114075978
Tamaricaceae	Reaumuria soongarica	3	MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045