Basic Information
Locus ID:
CH01.4151
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43342844 | 43349112 | - | CH01.4151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 65,030.55 Da | 43.01 | 86.13 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 134 | 396 | 4.14005E-127 | - |
| Pfam | PF00069 | Protein kinase domain | 135 | 397 | 4.7E-67 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 425 | 578 | 2.76E-16 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 133 | 449 | 6.34E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 415 | 506 | 2.3E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 422 | 573 | 2.3E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 221 | 412 | 1.4E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 131 | 220 | 5.7E-23 | - |
| SMART | SM00220 | serkin_6 | 135 | 397 | 2.8E-93 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 397 | 49.629433 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 141 | 167 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 259 | 271 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 6.17E-295 |
| RefSeq | XP_004984283.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Setaria italica] | 0 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 0 | |
| TrEMBL | K4A7I0 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101757290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology