Basic Information
Locus ID:
CH01.4112
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43012337 | 43013857 | + | CH01.4112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 54,753.70 Da | 56.10 | 84.47 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 3 | 36 | 1.4E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 255 | 350 | 1.7E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 54 | 8.63E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 40 | 5.9E-8 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 4.7E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 35 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17270.1 | F-box family protein. | 7.09E-6 |
| RefSeq | XP_051211026.1 | uncharacterized protein LOC127328472 [Lolium perenne] | 5.62E-54 |
| TrEMBL | A0A4U6T5C4 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G392400v2 PE=4 SV=1 | 2.89E-127 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH01.3850, BH04.2111, CH01.4111, CH01.4112 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ... |
| Poaceae | Oryza sativa | 8 | LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G485500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11989, nbis-gene-47249, nbis-gene-49948 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1101, Zma_g3492, Zma_g3565 |