Basic Information
Locus ID:
CH01.4111
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 43010276 | 43011468 | + | CH01.4111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 37,723.62 Da | 43.59 | 92.09 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 45 | 9.3E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 185 | 272 | 4.0E-7 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 58 | 4.97E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 47 | 2.5E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 92 | 273 | 3.0E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 2.22E-6 |
| RefSeq | XP_048552344.1 | uncharacterized protein LOC125532252 [Triticum urartu] | 1.22E-51 |
| TrEMBL | A0A2T7CC68 | FBA_1 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G462400 PE=4 SV=1 | 2.82E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH01.3850, BH04.2111, CH01.4111, CH01.4112 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ... |
| Poaceae | Oryza sativa | 8 | LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G485500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11989, nbis-gene-47249, nbis-gene-49948 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1101, Zma_g3492, Zma_g3565 |