Basic Information
Locus ID:
CH01.4020
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 42243329 | 42244792 | - | CH01.4020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 50,187.27 Da | 60.21 | 83.22 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 229 | 273 | 5.08512E-18 | - |
| Pfam | PF13639 | Ring finger domain | 229 | 273 | 3.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 278 | 5.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 279 | 9.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 272 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 273 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 329 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 3.66E-24 |
| RefSeq | XP_025795783.1 | E3 ubiquitin-protein ligase ATL31-like [Panicum hallii] | 2.25E-135 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 3.59E-23 | |
| TrEMBL | A0A3L6TPK0 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G17050 PE=4 SV=1 | 8.46E-135 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3418, BH01.3771, CH01.4020 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0250950, gene-QOZ80_3BG0277360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0385990.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067506 |
| Poaceae | Oryza coarctata | 2 | Oco05G015100, Oco06G015550 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g27360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G333100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G024960, Chr04G012760, Chr07G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G353000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014260, gene_TRIDC4BG035820 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G104900.1, TraesCS4B02G199100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb019010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12026 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1079 |