Basic Information
Locus ID:
CH01.3984
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
It is involved in the biological process described with protein phosphorylation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 41845976 | 41848433 | + | CH01.3984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 21,288.72 Da | 41.55 | 105.27 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 163 | 1.32E-11 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 23 | 80 | 2.1E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 81 | 174 | 1.3E-10 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 184 | 9.107256 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43320.2 | - | 4.6E-52 |
| RefSeq | XP_004976210.1 | casein kinase 1 isoform X2 [Setaria italica] | 4.42E-55 |
| Q6K9N1 | Casein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKI1 PE=1 SV=1 | 5.06E-54 | |
| TrEMBL | A0A3L6PS34 | Casein kinase I isoform alpha-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G14100 PE=3 SV=1 | 7.85E-57 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah006375 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010269 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011600 |
| Apiaceae | Apium graveolens | 6 | Ag10G00887, Ag4G00179, Ag5G00920, Ag5G01818, Ag6G02731 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.84.V1.1, AsparagusV1_Unassigned.1111.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB03g068750.2N |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02064 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3984 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005496, gene-QYE76_008607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G025590 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G305200, Tel6E01G260700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG018550 |
| Poaceae | Zea mays | 7 | Zm00001eb046190_P001, Zm00001eb096600_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29461, nbis-gene-39846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8091 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4613 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1978 |
| Salicaceae | Populus euphratica | 1 | populus_peu22068 |