Basic Information
Locus ID:
CH01.3974
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 41758710 | 41763984 | + | CH01.3974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 77,558.08 Da | 39.30 | 84.83 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 417 | 685 | 9.4E-38 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 173 | 2.6E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 66 | 3.5E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 245 | 1.78E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 397 | 686 | 6.42E-65 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 254 | 2.3E-48 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 492 | 1.2E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 703 | 1.6E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 161 | 184 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 160 | 9.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 116 | 9.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 208 | 280.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 140 | 161 | 7.719656 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 415 | 689 | 33.304665 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 421 | 444 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.1 | STRUBBELIG-receptor family 7. | 2.01E-188 |
| RefSeq | XP_039785771.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Panicum virgatum] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 1.94E-187 | |
| TrEMBL | A0A8T0NWA9 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG395800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology