Basic Information
Locus ID:
CH01.3846
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 40543089 | 40545655 | + | CH01.3846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.34 | 78,987.24 Da | 46.09 | 85.98 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 290 | 317 | 1.43403E-6 | - |
| CDD | cd14066 | STKc_IRAK | 419 | 687 | 1.54317E-87 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 150 | 207 | 8.8E-11 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 415 | 680 | 9.5E-44 | IPR000719 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 253 | 328 | 1.26E-8 | IPR009030 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 684 | 4.51E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 488 | 1.7E-32 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 294 | 330 | 6.5E-8 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 250 | 293 | 1.3E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 489 | 707 | 3.3E-53 | - |
| SMART | SM00181 | egf_5 | 92 | 139 | 28.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 293 | 328 | 16.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 252 | 289 | 7.9 | IPR000742 |
| SMART | SM00220 | serkin_6 | 413 | 687 | 4.0E-31 | IPR000719 |
| SMART | SM00179 | egfca_6 | 290 | 328 | 2.6E-5 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 413 | 687 | 37.106709 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 290 | 313 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 535 | 547 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 419 | 441 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 1.19E-124 |
| RefSeq | XP_025795388.1 | wall-associated receptor kinase 3-like [Panicum hallii] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 1.15E-123 | |
| TrEMBL | A0A835F5T8 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_018316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |