Basic Information
Locus ID:
CH01.3809
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 40131851 | 40132420 | - | CH01.3809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 19,356.91 Da | 31.07 | 67.30 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 34 | 187 | 2.37813E-70 | - |
| Pfam | PF00314 | Thaumatin family | 38 | 173 | 4.1E-34 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 31 | 188 | 4.45E-47 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 32 | 187 | 2.7E-47 | IPR037176 |
| SMART | SM00205 | tha2 | 34 | 187 | 2.3E-33 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 167 | 2.0E-45 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 165 | 189 | 1.8 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 31 | 187 | 28.682522 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 33 | 45 | 1.8E-27 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 75 | 86 | 1.8E-27 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 53 | 62 | 1.8E-27 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 87 | 116 | 1.8E-27 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 177 | 186 | 1.8E-27 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 8.54E-35 |
| RefSeq | XP_025809288.1 | thaumatin-like pathogenesis-related protein 3 [Panicum hallii] | 2.82E-109 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 1.13E-59 | |
| TrEMBL | A0A2S3HG34 | Thaumatin-like protein OS=Panicum hallii OX=206008 GN=PAHAL_3G506700 PE=4 SV=1 | 6.38E-108 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology