Basic Information
Locus ID:
CH01.3664
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 38635647 | 38636065 | + | CH01.3664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 13,561.35 Da | 80.25 | 75.17 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 63 | 89 | 5.1E-12 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 63 | 94 | 9.56E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 103 | 6.9E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 89 | 9.479666 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 2.29E-8 |
| RefSeq | XP_034568553.1 | probable E3 ubiquitin-protein ligase ATL45 [Setaria viridis] | 3.83E-19 |
| Q9CY62 | E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1 | 9.22E-10 | |
| TrEMBL | A0A0A8ZMX7 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 5.95E-19 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120510 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1134 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0062s00026.v1.0 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3664 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031833, gene-QYE76_031838 |