Basic Information
Locus ID:
CH01.3657
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 38576683 | 38580468 | - | CH01.3657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 59,448.51 Da | 43.24 | 80.44 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 75 | 325 | 1.06776E-116 | - |
| CDD | cd00051 | EFh | 446 | 501 | 5.78184E-10 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 454 | 502 | 2.6E-4 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 385 | 432 | 0.025 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 76 | 326 | 6.7E-64 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 364 | 503 | 6.0E-30 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 344 | 7.55E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 159 | 340 | 3.1E-48 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 351 | 500 | 1.9E-39 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 342 | 434 | 1.9E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 65 | 157 | 1.3E-25 | - |
| SMART | SM00220 | serkin_6 | 76 | 326 | 2.2E-77 | IPR000719 |
| SMART | SM00054 | efh_1 | 475 | 503 | 0.027 | IPR002048 |
| SMART | SM00054 | efh_1 | 372 | 400 | 0.51 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 471 | 506 | 9.380651 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 368 | 403 | 11.082272 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 76 | 326 | 40.555405 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 195 | 207 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 82 | 109 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38230.3 | calcium-dependent protein kinase 26. member of Calcium Dependent Protein Kinase | 1.19E-191 |
| RefSeq | XP_025795030.1 | calcium-dependent protein kinase 23-like [Panicum hallii] | 0 |
| P53682 | Calcium-dependent protein kinase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK23 PE=1 SV=2 | 4.88E-267 | |
| TrEMBL | A0A1E5VUB4 | Calcium-dependent protein kinase isoform 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0010316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3068, BH01.3416, CH01.3657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300300 |
| Poaceae | Zea mays | 1 | Zm00001eb022180_P001 |