Basic Information
Locus ID:
CH01.3639
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 38427343 | 38427747 | - | CH01.3639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 14,441.26 Da | 23.40 | 93.88 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 55 | 128 | 5.80243E-39 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 55 | 126 | 4.3E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 53 | 129 | 2.54E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 54 | 131 | 5.6E-30 | - |
| SMART | SM00213 | ubq_7 | 53 | 124 | 2.1E-21 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 55 | 128 | 24.267893 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 79 | 104 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 105 | 126 | 1.2E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 84 | 104 | 1.2E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 63 | 83 | 1.2E-18 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 3.31E-31 |
| RefSeq | XP_025798259.1 | NEDD8-like [Panicum hallii] | 2.81E-50 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 2.94E-30 | |
| TrEMBL | A0A3L6SI88 | Ubiquitin-NEDD8-like protein RUB2 OS=Panicum miliaceum OX=4540 GN=C2845_PM02G21210 PE=4 SV=1 | 6.35E-49 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00018702 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3052, BH01.3399, CH01.3639 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G299200 |