Basic Information
Locus ID:
CH01.362
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MULE transposase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 2662670 | 2670488 | - | CH01.362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 163,261.78 Da | 45.03 | 78.68 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 194 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 151 | 0.1 | IPR001680 |
| Pfam | PF10551 | MULE transposase domain | 931 | 993 | 5.1E-11 | IPR018289 |
| Pfam | PF10536 | Plant mobile domain | 1379 | 1441 | 1.8E-20 | IPR019557 |
| Pfam | PF03108 | MuDR family transposase | 729 | 792 | 1.3E-6 | IPR004332 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 77 | 320 | 9.46E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 29 | 330 | 1.5E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 117 | 152 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 328 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 63 | 103 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 194 | 0.19 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 177 | 203 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 1188 | 1220 | 8.71608 | IPR007527 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 181 | 195 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1269 | 1288 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52190.1 | phosphate transporter traffic facilitator1. Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. | 2.63E-109 |
| RefSeq | XP_039782167.1 | SEC12-like protein 1 [Panicum virgatum] | 7.37E-208 |
| Q8GYE0 | SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2 | 2.54E-108 | |
| TrEMBL | K3XSX3 | SWIM-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology