Basic Information
Locus ID:
CH01.3616
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 38178449 | 38183432 | + | CH01.3616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 46,376.00 Da | 40.03 | 104.95 | 0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 425 | 1.46524E-42 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 11 | 387 | 7.4E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 421 | 4.71E-34 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 428 | 7.4E-36 | IPR036259 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 85 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 229 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 4.57E-134 |
| RefSeq | XP_039828104.1 | hippocampus abundant transcript 1 protein-like [Panicum virgatum] | 3.21E-274 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 2.82E-14 | |
| TrEMBL | A0A8T0MRF0 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG467200 PE=4 SV=1 | 7.27E-273 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology