Basic Information
Locus ID:
CH01.3583
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 37921337 | 37926462 | + | CH01.3583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 100,488.78 Da | 51.68 | 81.34 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 830 | 871 | 6.57691E-20 | - |
| CDD | cd01989 | STK_N | 48 | 203 | 1.79575E-34 | - |
| Pfam | PF04564 | U-box domain | 827 | 897 | 1.9E-16 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 539 | 742 | 4.9E-42 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 64 | 193 | 1.26E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 517 | 801 | 4.72E-66 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 823 | 897 | 1.85E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 825 | 902 | 4.5E-26 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 42 | 169 | 2.5E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 518 | 610 | 8.3E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 611 | 823 | 2.0E-45 | - |
| SMART | SM00504 | Ubox_2 | 829 | 892 | 2.6E-24 | IPR003613 |
| SMART | SM00220 | serkin_6 | 538 | 799 | 1.8E-30 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 825 | 899 | 29.696781 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 538 | 822 | 33.658016 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 656 | 668 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 544 | 565 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 237 | - | - |
| Coils | Coil | Coil | 116 | 136 | - | - |
| Coils | Coil | Coil | 483 | 510 | - | - |
| Coils | Coil | Coil | 455 | 475 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 2.91E-184 |
| RefSeq | XP_004986828.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 2.81E-183 | |
| TrEMBL | A0A2T7CA80 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G409600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology