Basic Information
Locus ID:
CH01.3440
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Plays a complex role in regulating the basal catalytic activity of the alpha subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 36266610 | 36276798 | - | CH01.3440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 88,804.92 Da | 60.38 | 71.94 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 359 | 424 | 2.93542E-13 | IPR002048 |
| Pfam | PF01214 | Casein kinase II regulatory subunit | 621 | 797 | 3.4E-63 | IPR000704 |
| Pfam | PF13499 | EF-hand domain pair | 357 | 427 | 8.2E-9 | IPR002048 |
| SUPERFAMILY | SSF57798 | Casein kinase II beta subunit | 619 | 801 | 3.01E-68 | IPR035991 |
| SUPERFAMILY | SSF47473 | EF-hand | 272 | 444 | 1.27E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.1820.10 | protein kinase ck2 holoenzyme, chain C, domain 1 | 614 | 718 | 9.6E-41 | IPR016149 |
| Gene3D | G3DSA:1.10.238.10 | - | 268 | 458 | 2.5E-60 | - |
| Gene3D | G3DSA:2.20.25.20 | - | 719 | 786 | 4.3E-18 | - |
| SMART | SM00054 | efh_1 | 403 | 431 | 0.1 | IPR002048 |
| SMART | SM01085 | CK_II_beta_2 | 621 | 797 | 8.3E-104 | IPR000704 |
| SMART | SM00054 | efh_1 | 322 | 350 | 18.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 359 | 387 | 0.016 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 399 | 434 | 11.305434 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 318 | 353 | 10.133827 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 355 | 390 | 13.732334 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 368 | 380 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 412 | 424 | - | IPR018247 |
| PRINTS | PR00472 | Casein kinase II regulatory subunit family signature | 693 | 714 | 1.1E-39 | IPR000704 |
| PRINTS | PR00472 | Casein kinase II regulatory subunit family signature | 638 | 652 | 1.1E-39 | IPR000704 |
| PRINTS | PR00472 | Casein kinase II regulatory subunit family signature | 718 | 739 | 1.1E-39 | IPR000704 |
| PRINTS | PR00472 | Casein kinase II regulatory subunit family signature | 621 | 637 | 1.1E-39 | IPR000704 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 145 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44680.2 | casein kinase II beta subunit 4. Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock. | 4.47E-111 |
| RefSeq | XP_039826253.1 | putative casein kinase II subunit beta-4 [Panicum virgatum] | 2.42E-167 |
| Q7XC27 | Calcineurin B-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL1 PE=2 SV=2 | 8.65E-117 | |
| TrEMBL | A0A3L6S899 | Casein kinase II subunit beta OS=Panicum miliaceum OX=4540 GN=C2845_PM02G19700 PE=3 SV=1 | 1.4E-282 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology