Basic Information
Locus ID:
CH01.3434
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 36191940 | 36227988 | + | CH01.3434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 471,260.50 Da | 44.38 | 88.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16910 | Repeating coiled region of VPS13 | 554 | 767 | 1.0E-32 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4065 | 4156 | 5.1E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2194 | 2340 | 1.2E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1979 | 2116 | 1.6E-12 | IPR009291 |
| Pfam | PF00169 | PH domain | 790 | 894 | 3.8E-6 | IPR001849 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 4.4E-63 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3179 | 3337 | 2.4E-9 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 3.7E-30 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 788 | 898 | 7.46E-9 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 786 | 898 | 5.2E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 788 | 897 | 1.2E-5 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 787 | 895 | 9.1474 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1046 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1038 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_025793396.1 | uncharacterized protein LOC112874336 isoform X1 [Panicum hallii] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 1.82E-54 | |
| TrEMBL | A0A2T8I3V7 | PH domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G380200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology