Basic Information
Locus ID:
CH01.3379
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 35488750 | 35495558 | - | CH01.3379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 98,255.66 Da | 60.75 | 57.69 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 334 | 572 | 4.6E-25 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 324 | 594 | 6.67E-57 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 325 | 595 | 6.0E-58 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 333 | 633 | 30.318375 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 758 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57990.1 | ubiquitin-specific protease 23. Encodes a ubiquitin-specific protease. | 2.86E-44 |
| RefSeq | XP_025791949.1 | uncharacterized protein LOC112873146 [Panicum hallii] | 0 |
| Q9FPS4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 | 2.83E-43 | |
| TrEMBL | A0A3L6TRN2 | USP domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G47180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2801, BH01.3132, CH01.3379 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G027010, Chr15G018120 |
| Poaceae | Zea mays | 1 | Zm00001eb390390_P002 |