Basic Information
Locus ID:
CH01.3356
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 35177911 | 35182201 | - | CH01.3356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 51,254.17 Da | 35.75 | 81.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 290 | 7.7E-5 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 58 | 115 | 3.9E-7 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 381 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 333 | 0.093 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 154 | 442 | 1.97E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 447 | 1.9E-96 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 290 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 184 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 334 | 4.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 4.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 348 | 382 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 390 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 257 | 295 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 257 | 295 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 301 | 336 | 8.67045 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 140 | - | - |
| Coils | Coil | Coil | 388 | 408 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19540.1 | Transducin family protein / WD-40 repeat family protein. | 9.05E-132 |
| RefSeq | XP_034575885.1 | glutamate-rich WD repeat-containing protein 1-like isoform X2 [Setaria viridis] | 2.76E-209 |
| Q9ZUN8 | Protein HEAT STRESS TOLERANT DWD 1 OS=Arabidopsis thaliana OX=3702 GN=HTD1 PE=1 SV=1 | 8.71E-131 | |
| TrEMBL | A0A368SMM9 | CAF1C_H4-bd domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_9G310000v2 PE=3 SV=1 | 2.4E-210 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14730, jg3215 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11057 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015368 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg25341, Sbi_jg29451, Sbi_jg3696, Sbi_jg3697, Sbi_jg9193 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19396, Seu_jg6280 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011154 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42909, Sgl47701, Sgl47749 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009399, gene:ENSEOMG00000035333 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014210, CQ.Regalona.r1.8BG0015600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258160 |
| Apiaceae | Apium graveolens | 1 | Ag10G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000340, scaffold006552G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720882 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1704.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G15028 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g045160.2N, BniB02g015660.2N, BniB03g068870.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0888 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02750 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0734s00001.v1.0, Dusal.1675s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1230 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002642, Pov_00027181 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20577 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.154, AH05.117, BH01.3123, BH04.189, BH05.126, CH01.3356 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0116890, gene-QOZ80_5AG0380300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0356500.1, HORVU.MOREX.r3.5HG0462210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065197 |
| Poaceae | Oryza coarctata | 4 | Oco21G000480, Oco22G001250, Oco23G001250, Oco24G000620 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03990.1, LOC_Os12g03822.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G231900, gene-BS78_05G031800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103699, Pt_Chr0103705 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021620, Chr06G023220, Chr16G008960, Chr17G007980 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G203400, Tel5E01G245400, Tel7E01G360200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029960, gene_TRIDC4BG020620 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G187400.1, TraesCS4B02G131200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163470_P003, Zm00001eb354080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25731, nbis-gene-27017 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18384 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1586, evm.TU.LG22.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19720 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1668, evm.TU.Scaffold_2_RagTag.757 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4426 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19859, nbisL1-mrna-8173 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3813, nbisL1-mrna-9475 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1098, evm.TU.utg000016l.611 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005754, Maker00016378 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12699, nbisL1-mrna-5037, nbisL1-mrna-5038 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13641, nbisL1-mrna-5959 |
| Salicaceae | Populus euphratica | 2 | populus_peu13761, populus_peu22920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617872 |
| Solanaceae | Solanum chilense | 2 | SOLCI000734300, SOLCI002959800 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107018817, gene-LOC107019265, gene-LOC107019516 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6534 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1777 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00190.v3.1, Zosma06g11720.v3.1 |