Basic Information
Locus ID:
CH01.3268
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 34409129 | 34411970 | - | CH01.3268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 63,155.35 Da | 68.72 | 85.86 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 60 | 128 | 1.4E-9 | IPR001441 |
| SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 60 | 129 | 7.19E-10 | IPR036424 |
| SUPERFAMILY | SSF81383 | F-box domain | 169 | 228 | 7.85E-8 | IPR036047 |
| Gene3D | G3DSA:3.40.1180.10 | - | 54 | 130 | 1.3E-14 | IPR036424 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 169 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58770.1 | Undecaprenyl pyrophosphate synthetase family protein. | 2.71E-6 |
| RefSeq | XP_014758656.1 | uncharacterized protein LOC100831682 [Brachypodium distachyon] | 4.94E-39 |
| TrEMBL | A0A3L6TG85 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G48260 PE=4 SV=1 | 2.19E-161 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2718, CH01.3268 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0172800 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011763 |