Basic Information
Locus ID:
CH01.3251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 34210362 | 34220426 | + | CH01.3251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 101,554.03 Da | 45.89 | 72.61 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 187 | 314 | 1.98358E-64 | - |
| CDD | cd18635 | CD_CMT3_like | 444 | 498 | 8.00158E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 507 | 866 | 2.4E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 445 | 498 | 1.4E-13 | IPR023780 |
| Pfam | PF01426 | BAH domain | 189 | 311 | 1.0E-12 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 434 | 506 | 2.02E-16 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 344 | 869 | 8.68E-79 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 661 | 835 | 1.7E-271 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 346 | 887 | 1.7E-271 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 134 | 298 | 7.6E-56 | IPR043151 |
| SMART | SM00439 | BAH_4 | 188 | 313 | 1.2E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 444 | 501 | 3.9E-11 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 344 | 876 | 45.822018 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 188 | 313 | 18.324505 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 445 | 499 | 14.295101 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 513 | 525 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 466 | 486 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 345 | 361 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 556 | 570 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 602 | 615 | 1.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 64 | - | - |
| Coils | Coil | Coil | 20 | 43 | - | - |
| Coils | Coil | Coil | 89 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 3.82E-260 |
| RefSeq | XP_039784885.1 | DNA (cytosine-5)-methyltransferase 3-like isoform X2 [Panicum virgatum] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7C918 | Chromomethylase 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G373600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology