Basic Information
Locus ID:
CH01.3240
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 34061277 | 34065882 | - | CH01.3240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 164,628.02 Da | 44.62 | 88.02 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 996 | 1245 | 5.5482E-52 | - |
| CDD | cd14798 | RX-CC_like | 9 | 129 | 3.8644E-26 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 12 | 96 | 2.4E-23 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 177 | 414 | 4.1E-48 | IPR002182 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1006 | 1243 | 2.3E-42 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 567 | 708 | 6.99E-8 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 929 | 1304 | 6.0E-22 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 155 | 428 | 2.08E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.70.270 | - | 1041 | 1218 | 1.2E-8 | IPR043128 |
| Gene3D | G3DSA:3.40.50.300 | - | 161 | 318 | 8.5E-35 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 327 | 413 | 1.8E-15 | IPR042197 |
| Gene3D | G3DSA:1.10.10.10 | - | 414 | 505 | 9.2E-14 | IPR036388 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 539 | 720 | 3.2E-17 | IPR036691 |
| Gene3D | G3DSA:1.20.5.4130 | - | 11 | 119 | 8.1E-28 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 983 | 1245 | 23.265915 | IPR000477 |
| PRINTS | PR00364 | Disease resistance protein signature | 363 | 377 | 4.4E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 266 | 280 | 4.4E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 192 | 207 | 4.4E-13 | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
| Coils | Coil | Coil | 122 | 142 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 1.67E-70 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| Q2R8L1 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 | 1.14E-85 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |