Basic Information
Locus ID:
CH01.3157
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 32525012 | 32526337 | - | CH01.3157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 46,005.44 Da | 40.75 | 106.60 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 19 | 61 | 5.12187E-19 | - |
| Pfam | PF04564 | U-box domain | 16 | 86 | 2.8E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 87 | 6.62E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 116 | 416 | 5.35E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 104 | 415 | 2.9E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 91 | 4.0E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 18 | 82 | 6.6E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 14 | 89 | 35.048428 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 2.05E-48 |
| RefSeq | XP_025797419.1 | U-box domain-containing protein 21-like [Panicum hallii] | 9.23E-191 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 2.0E-47 | |
| TrEMBL | A0A1E5UUL2 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022473 PE=4 SV=1 | 2.35E-198 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology