Basic Information
Locus ID:
CH01.3154
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 32432655 | 32434912 | + | CH01.3154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 60,579.19 Da | 53.56 | 74.98 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 345 | 390 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 339 | 412 | 1.57E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 329 | 478 | 1.9E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 340 | 389 | 9.656436 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 507 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | NP_001152105.1 | F-box domain containing protein [Zea mays] | 8.5E-46 |
| TrEMBL | A0A8T0NNV2 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG278000 PE=4 SV=1 | 7.09E-110 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.2957, CH01.3154 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0034520, gene-QOZ80_5AG0375060 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G194300 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021480, Chr02G008650, Chr05G024830, Chr08G017020 ... |
| Poaceae | Zea mays | 2 | Zm00001eb224500_P001, Zm00001eb224510_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-23678, nbis-gene-23679, nbis-gene-23680 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28150, Zma_g28151 |