HalophFGD

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Basic Information
Locus ID: CH01.3122
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
CH01 31662597 31667153 - CH01.3122
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.95 86,021.10 Da 59.57 70.13 -0.37
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 128 168 1.8E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 128 183 3.66E-10 IPR036047
MobiDBLite mobidb-lite consensus disorder prediction 1 124 - -
MobiDBLite mobidb-lite consensus disorder prediction 98 124 - -
MobiDBLite mobidb-lite consensus disorder prediction 606 633 - -
MobiDBLite mobidb-lite consensus disorder prediction 607 629 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_034576365.1 uncharacterized protein LOC117840016 [Setaria viridis] 5.18E-299
TrEMBL A0A4U6T1U8 F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G292800v2 PE=4 SV=1 1.17E-297
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Plantaginaceae Plantago ovata 1 Pov_00027636
Poaceae Echinochloa crus-galli 26 AH01.2562, AH01.2591, AH01.2597, AH05.2770, AH05.2771 ...
AH09.150, BH01.2897, BH01.2916, BH01.2925, BH03.3339, BH03.3340, BH05.2870, BH08.1494, BH08.1495, BH09.232, CH01.3090, CH01.3112, CH01.3122, CH01.3126, CH01.3141, CH03.3527, CH05.2913, CH07.936, CH09.203, CH09.208, CH09.2699
Poaceae Eleusine coracana subsp. coracana 39 gene-QOZ80_2AG0107940, gene-QOZ80_2AG0107950 ...
gene-QOZ80_2AG0107960, gene-QOZ80_2AG0107970, gene-QOZ80_2AG0118950, gene-QOZ80_2AG0118970, gene-QOZ80_2AG0119680, gene-QOZ80_2AG0119750, gene-QOZ80_2AG0119760, gene-QOZ80_2BG0161560, gene-QOZ80_2BG0161570, gene-QOZ80_2BG0161580, gene-QOZ80_2BG0161590, gene-QOZ80_2BG0161600, gene-QOZ80_2BG0161610, gene-QOZ80_2BG0172790, gene-QOZ80_2BG0173140, gene-QOZ80_2BG0173180, gene-QOZ80_4AG0327120, gene-QOZ80_4BG0359080, gene-QOZ80_5AG0375520, gene-QOZ80_5AG0376210, gene-QOZ80_5AG0376230, gene-QOZ80_5AG0376240, gene-QOZ80_5AG0376260, gene-QOZ80_5AG0382230, gene-QOZ80_5AG0382650, gene-QOZ80_5AG0390310, gene-QOZ80_5BG0422920, gene-QOZ80_5BG0423440, gene-QOZ80_5BG0423450, gene-QOZ80_5BG0423460, gene-QOZ80_5BG0423470, gene-QOZ80_5BG0423480, gene-QOZ80_5BG0429160, gene-QOZ80_5BG0438180, gene-QOZ80_7AG0561800, gene-QOZ80_7BG0595200, gene-QOZ80_8AG0628170
Poaceae Hordeum vulgare 25 HORVU.MOREX.r3.1HG0055250.1.CDS1 ...
HORVU.MOREX.r3.1HG0093820.1, HORVU.MOREX.r3.2HG0128260.1.CDS1, HORVU.MOREX.r3.3HG0229360.1.CDS1, HORVU.MOREX.r3.5HG0495310.1, HORVU.MOREX.r3.5HG0495320.1, HORVU.MOREX.r3.5HG0515390.1, HORVU.MOREX.r3.5HG0523120.1.CDS1, HORVU.MOREX.r3.6HG0540230.1, HORVU.MOREX.r3.6HG0540250.1.CDS1, HORVU.MOREX.r3.6HG0540280.1, HORVU.MOREX.r3.6HG0540390.2, HORVU.MOREX.r3.6HG0547490.1, HORVU.MOREX.r3.6HG0547550.1, HORVU.MOREX.r3.6HG0547690.1.CDS1, HORVU.MOREX.r3.6HG0547720.1, HORVU.MOREX.r3.6HG0548310.1.CDS1, HORVU.MOREX.r3.6HG0548510.1, HORVU.MOREX.r3.6HG0548530.1, HORVU.MOREX.r3.6HG0550310.1, HORVU.MOREX.r3.6HG0550450.1, HORVU.MOREX.r3.6HG0550570.1, HORVU.MOREX.r3.6HG0550700.1, HORVU.MOREX.r3.6HG0550740.1, HORVU.MOREX.r3.6HG0568860.1
Poaceae Lolium multiflorum 92 gene-QYE76_000752, gene-QYE76_000859, gene-QYE76_000860 ...
gene-QYE76_001240, gene-QYE76_003475, gene-QYE76_003977, gene-QYE76_005386, gene-QYE76_006557, gene-QYE76_006923, gene-QYE76_008909, gene-QYE76_010286, gene-QYE76_012399, gene-QYE76_012453, gene-QYE76_013502, gene-QYE76_019292, gene-QYE76_019294, gene-QYE76_019301, gene-QYE76_019420, gene-QYE76_019422, gene-QYE76_019423, gene-QYE76_019424, gene-QYE76_019645, gene-QYE76_019691, gene-QYE76_019693, gene-QYE76_019699, gene-QYE76_019712, gene-QYE76_019717, gene-QYE76_019718, gene-QYE76_019721, gene-QYE76_019728, gene-QYE76_019729, gene-QYE76_019730, gene-QYE76_019733, gene-QYE76_019735, gene-QYE76_019736, gene-QYE76_019737, gene-QYE76_019740, gene-QYE76_019743, gene-QYE76_020257, gene-QYE76_020603, gene-QYE76_020624, gene-QYE76_020725, gene-QYE76_021361, gene-QYE76_024521, gene-QYE76_025786, gene-QYE76_025800, gene-QYE76_027268, gene-QYE76_029345, gene-QYE76_035824, gene-QYE76_036699, gene-QYE76_039318, gene-QYE76_039755, gene-QYE76_039911, gene-QYE76_039917, gene-QYE76_043927, gene-QYE76_046998, gene-QYE76_049342, gene-QYE76_049346, gene-QYE76_049365, gene-QYE76_049422, gene-QYE76_049424, gene-QYE76_049425, gene-QYE76_049427, gene-QYE76_049430, gene-QYE76_049697, gene-QYE76_049715, gene-QYE76_049894, gene-QYE76_051216, gene-QYE76_051225, gene-QYE76_051226, gene-QYE76_051269, gene-QYE76_052014, gene-QYE76_052016, gene-QYE76_052017, gene-QYE76_052023, gene-QYE76_052029, gene-QYE76_052750, gene-QYE76_052751, gene-QYE76_054890, gene-QYE76_054891, gene-QYE76_054893, gene-QYE76_054894, gene-QYE76_054917, gene-QYE76_054920, gene-QYE76_055565, gene-QYE76_056687, gene-QYE76_056871, gene-QYE76_060038, gene-QYE76_062322, gene-QYE76_062325, gene-QYE76_063252, gene-QYE76_066332
Poaceae Oryza coarctata 15 Oco03G006820, Oco03G006830, Oco04G007110, Oco13G000770 ...
Oco14G010750, Oco14G012670, Oco19G000640, Oco19G000650, Oco19G000900, Oco20G000660, Oco20G000700, Oco20G000720, Oco20G000740, Oco20G000800, Oco20G001050
Poaceae Oryza sativa 23 LOC_Os02g15160.1, LOC_Os05g25580.1, LOC_Os10g04690.1 ...
LOC_Os10g04700.2, LOC_Os10g04750.1, LOC_Os10g04770.1, LOC_Os10g04780.1, LOC_Os10g04850.1, LOC_Os10g04950.1, LOC_Os10g04980.1, LOC_Os10g05000.1, LOC_Os10g05010.1, LOC_Os10g05200.1, LOC_Os10g05210.1, LOC_Os10g05240.1, LOC_Os10g05520.1, LOC_Os10g05530.1, LOC_Os10g05540.1, LOC_Os10g05590.1, LOC_Os10g06700.1, LOC_Os10g10980.1, LOC_Os11g06580.1, LOC_Os11g38840.1
Poaceae Paspalum vaginatum 22 gene-BS78_01G260300, gene-BS78_01G262200, gene-BS78_K013100 ...
gene-BS78_01G262800, gene-BS78_04G135300, gene-BS78_05G031300, gene-BS78_05G217400, gene-BS78_05G218100, gene-BS78_06G189900, gene-BS78_07G121200, gene-BS78_07G121300, gene-BS78_09G117300, gene-BS78_09G117600, gene-BS78_10G242600, gene-BS78_K169300, gene-BS78_K169400, gene-BS78_K169600, gene-BS78_K288200, gene-BS78_K288300, gene-BS78_K288400, gene-BS78_K288600, gene-BS78_K288700
Poaceae Puccinellia tenuiflora 48 Pt_Chr0104540, Pt_Chr0106656, Pt_Chr0200641, Pt_Chr0200881 ...
Pt_Chr0200895, Pt_Chr0200901, Pt_Chr0200962, Pt_Chr0201007, Pt_Chr0201016, Pt_Chr0201033, Pt_Chr0201036, Pt_Chr0201039, Pt_Chr0201040, Pt_Chr0201046, Pt_Chr0201047, Pt_Chr0201052, Pt_Chr0201053, Pt_Chr0201055, Pt_Chr0201056, Pt_Chr0201091, Pt_Chr0201176, Pt_Chr0202832, Pt_Chr0202835, Pt_Chr0202838, Pt_Chr0203214, Pt_Chr0205583, Pt_Chr0205584, Pt_Chr0205590, Pt_Chr0205677, Pt_Chr0205678, Pt_Chr0205680, Pt_Chr0206019, Pt_Chr0207040, Pt_Chr0207245, Pt_Chr0207254, Pt_Chr0207257, Pt_Chr0207260, Pt_Chr0207262, Pt_Chr0300256, Pt_Chr0306278, Pt_Chr0307507, Pt_Chr0601161, Pt_Chr0601174, Pt_Chr0601306, Pt_Chr0700541, Pt_Chr0704770, Pt_Chr0705000, Pt_Chr0705263
Poaceae Sporobolus alterniflorus 11 Chr01G021990, Chr02G022660, Chr04G022830, Chr05G013540 ...
Chr06G024620, Chr13G022370, Chr18G007030, Chr22G010300, Chr25G016010, Chr25G016020, Chr25G016030
Poaceae Thinopyrum elongatum 62 Tel1E01G353200, Tel1E01G728200, Tel2E01G1037700 ...
Tel3E01G026300, Tel3E01G028500, Tel3E01G028600, Tel3E01G119300, Tel3E01G119500, Tel3E01G120400, Tel3E01G136700, Tel3E01G136900, Tel3E01G565700, Tel3E01G702500, Tel3E01G702800, Tel3E01G704100, Tel3E01G913900, Tel5E01G108300, Tel5E01G108600, Tel5E01G650000, Tel6E01G033400, Tel6E01G034900, Tel6E01G035400, Tel6E01G042700, Tel6E01G102100, Tel6E01G136900, Tel6E01G137000, Tel6E01G137500, Tel6E01G139500, Tel6E01G139900, Tel6E01G142300, Tel6E01G143000, Tel6E01G143200, Tel6E01G144500, Tel6E01G147100, Tel6E01G147500, Tel6E01G152500, Tel6E01G154200, Tel6E01G154300, Tel6E01G154700, Tel6E01G155200, Tel6E01G155500, Tel6E01G155600, Tel6E01G155700, Tel6E01G157200, Tel6E01G169800, Tel6E01G170500, Tel6E01G170700, Tel6E01G171600, Tel6E01G174200, Tel6E01G176000, Tel6E01G176100, Tel6E01G176200, Tel6E01G176400, Tel6E01G178000, Tel6E01G178500, Tel6E01G179000, Tel6E01G179900, Tel6E01G752200, Tel6E01G752300, Tel7E01G174500, Tel7E01G854100, Telscf55701G000100
Poaceae Triticum dicoccoides 34 gene_TRIDC1AG030950, gene_TRIDC1AG045240 ...
gene_TRIDC1AG063250, gene_TRIDC1BG036420, gene_TRIDC1BG072540, gene_TRIDC2AG003470, gene_TRIDC2BG026970, gene_TRIDC3AG050840, gene_TRIDC3BG012610, gene_TRIDC3BG057250, gene_TRIDC3BG070590, gene_TRIDC4AG049780, gene_TRIDC5AG044160, gene_TRIDC5BG048100, gene_TRIDC5BG064490, gene_TRIDC6AG000820, gene_TRIDC6AG000900, gene_TRIDC6AG007830, gene_TRIDC6AG007870, gene_TRIDC6AG008020, gene_TRIDC6AG009290, gene_TRIDC6AG009490, gene_TRIDC6AG022290, gene_TRIDC6BG001370, gene_TRIDC6BG001560, gene_TRIDC6BG001650, gene_TRIDC6BG009920, gene_TRIDC6BG009930, gene_TRIDC6BG009970, gene_TRIDC6BG009990, gene_TRIDC6BG010110, gene_TRIDC6BG011200, gene_TRIDC6BG011500, gene_TRIDC6BG014220
Poaceae Triticum aestivum 210 TraesCS1A02G063400.1, TraesCS1A02G205000.1.cds1 ...
TraesCS1A02G283700.2, TraesCS1A02G431000.1, TraesCS1B02G218600.1.cds1, TraesCS1B02G292900.2, TraesCS1B02G465800.1, TraesCS1D02G208300.1.cds1, TraesCS1D02G282800.1, TraesCS1D02G440200.1, TraesCS2A02G032900.1.cds1, TraesCS2A02G083800.1, TraesCS2A02G180500.2, TraesCS2A02G181100.1, TraesCS2B02G098000.1, TraesCS2B02G098300.1, TraesCS2B02G206600.1, TraesCS2B02G207300.1, TraesCS2B02G207700.1, TraesCS2D02G081800.1.cds1, TraesCS2D02G114000.1.cds1, TraesCS2D02G188900.1, TraesCS2D02G189000.1, TraesCS3A02G015700.1.cds1, TraesCS3A02G015900.1.cds1, TraesCS3A02G063100.1.cds1, TraesCS3A02G063500.1.cds1, TraesCS3A02G064000.1.cds1, TraesCS3A02G064200.1, TraesCS3A02G075300.1, TraesCS3A02G353100.1, TraesCS3A02G445100.1, TraesCS3A02G445700.1, TraesCS3A02G445800.1, TraesCS3A02G446100.1, TraesCS3B02G075200.1, TraesCS3B02G075400.1, TraesCS3B02G076200.1.cds1, TraesCS3B02G076400.1, TraesCS3B02G076500.1, TraesCS3B02G076600.1, TraesCS3B02G076700.1, TraesCS3B02G076800.1, TraesCS3B02G089200.2, TraesCS3B02G385800.1, TraesCS3B02G479700.1, TraesCS3B02G479800.1, TraesCS3B02G480400.1.cds1, TraesCS3B02G480500.1, TraesCS3B02G480600.1, TraesCS3B02G480700.1.cds1, TraesCS3B02G481200.1, TraesCS3D02G013100.1, TraesCS3D02G013200.1.cds1, TraesCS3D02G062800.1.cds1, TraesCS3D02G063200.1.cds1, TraesCS3D02G063500.1, TraesCS3D02G063900.1, TraesCS3D02G064600.1, TraesCS3D02G075300.1, TraesCS3D02G347200.1, TraesCS3D02G437700.1, TraesCS3D02G437800.1, TraesCS3D02G437900.1, TraesCS4A02G309100.1, TraesCS4B02G004100.1, TraesCS4D02G005200.1, TraesCS5B02G052200.1, TraesCS5B02G294300.1, TraesCS5B02G544300.1, TraesCS5D02G057900.1, TraesCS5D02G058300.1, TraesCS5D02G302500.1.cds1, TraesCS6A02G006600.1, TraesCS6A02G006700.1.cds1, TraesCS6A02G006800.1, TraesCS6A02G007500.1, TraesCS6A02G007600.1, TraesCS6A02G007700.2, TraesCS6A02G008200.1, TraesCS6A02G027100.1, TraesCS6A02G039700.1, TraesCS6A02G054300.1, TraesCS6A02G057000.1, TraesCS6A02G057500.1, TraesCS6A02G057600.1, TraesCS6A02G057800.1, TraesCS6A02G058100.1, TraesCS6A02G061800.1, TraesCS6A02G062100.1, TraesCS6A02G062200.1, TraesCS6A02G062500.1, TraesCS6A02G063700.1, TraesCS6A02G064000.1, TraesCS6A02G072900.1.cds1, TraesCS6A02G073100.1.cds1, TraesCS6A02G073200.1.cds1, TraesCS6A02G073500.1, TraesCS6A02G075600.1, TraesCS6A02G075800.1.cds1, TraesCS6A02G076400.2, TraesCS6A02G077100.1, TraesCS6A02G077200.1.cds1, TraesCS6A02G307000.1.cds1, TraesCS6A02G408500.1, TraesCS6B02G012600.1, TraesCS6B02G013700.9, TraesCS6B02G014100.1, TraesCS6B02G067400.1, TraesCS6B02G067900.1.cds1, TraesCS6B02G074400.1, TraesCS6B02G074500.2, TraesCS6B02G074600.1, TraesCS6B02G074700.1, TraesCS6B02G074900.1, TraesCS6B02G075000.1, TraesCS6B02G075400.1, TraesCS6B02G077700.1, TraesCS6B02G083000.3, TraesCS6B02G083300.1, TraesCS6B02G083400.1, TraesCS6B02G083600.1, TraesCS6B02G083700.1.cds1, TraesCS6B02G083800.1, TraesCS6B02G084600.1, TraesCS6B02G085300.2, TraesCS6B02G086000.1, TraesCS6B02G087900.1, TraesCS6B02G098000.1.cds1, TraesCS6B02G098100.1, TraesCS6B02G098200.1, TraesCS6B02G098500.1.cds1, TraesCS6B02G098600.1, TraesCS6B02G100500.1, TraesCS6B02G100600.1, TraesCS6B02G100900.1.cds1, TraesCS6B02G101100.1.cds1, TraesCS6B02G101200.1, TraesCS6B02G101600.1, TraesCS6B02G102400.1, TraesCS6B02G103100.1, TraesCS6B02G103400.1.cds1, TraesCS6B02G103600.1, TraesCS6B02G103700.1.cds1, TraesCS6B02G377900.1, TraesCS6B02G454700.1.cds1, TraesCS6D02G010000.1, TraesCS6D02G011000.1, TraesCS6D02G011800.1, TraesCS6D02G012000.1, TraesCS6D02G012800.1, TraesCS6D02G030900.1, TraesCS6D02G055700.1.cds1, TraesCS6D02G056400.1.cds1, TraesCS6D02G057500.1, TraesCS6D02G058000.1, TraesCS6D02G058100.1.cds1, TraesCS6D02G058400.1.cds1, TraesCS6D02G058500.1, TraesCS6D02G058800.1, TraesCS6D02G059000.1, TraesCS6D02G060800.1, TraesCS6D02G061100.1, TraesCS6D02G062400.1, TraesCS6D02G062600.1, TraesCS6D02G063500.1, TraesCS6D02G070700.1, TraesCS6D02G070800.2, TraesCS6D02G071300.1, TraesCS6D02G071500.1, TraesCS6D02G071900.1, TraesCS6D02G364000.1.cds1, TraesCS6D02G392400.1.cds1, TraesCS7A02G565300.1.cds1, TraesCS7A02G567100.1, TraesCS7B02G041300.1, TraesCS7B02G303500.1, TraesCS7B02G494400.1, TraesCS7B02G494800.1.cds1, TraesCS7B02G497800.1.cds1, TraesCS7B02G498200.1.cds1, TraesCS7B02G498500.1.cds1, TraesCS7D02G077500.1, TraesCS7D02G141000.1, TraesCS7D02G544400.1, TraesCSU02G025900.1, TraesCSU02G026300.1, TraesCSU02G026700.1, TraesCSU02G026900.1.cds1, TraesCSU02G027000.1, TraesCSU02G027500.1, TraesCSU02G027800.2, TraesCSU02G028000.1, TraesCSU02G028800.1, TraesCSU02G029200.1.cds1, TraesCSU02G056500.1.cds1, TraesCSU02G066800.1, TraesCSU02G066900.1, TraesCSU02G078500.1, TraesCSU02G110000.1, TraesCSU02G118200.1, TraesCSU02G119000.1, TraesCSU02G119100.1, TraesCSU02G120400.1, TraesCSU02G133400.1.cds1, TraesCSU02G133500.1.cds1, TraesCSU02G133800.1, TraesCSU02G141700.1, TraesCSU02G193700.1, TraesCSU02G235100.1.cds1
Poaceae Zea mays 2 Zm00001eb285670_P001, Zm00001eb346560_P001
Poaceae Zoysia japonica 5 nbis-gene-34195, nbis-gene-39366, nbis-gene-42294 ...
nbis-gene-43021, nbis-gene-43033
Poaceae Zoysia macrostachya 5 Zma_g13023, Zma_g13062, Zma_g15396, Zma_g15832, Zma_g19281
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.