Basic Information
Locus ID:
CH01.3117
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 31601210 | 31614275 | + | CH01.3117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 112,650.93 Da | 30.55 | 82.01 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 321 | 6.84203E-177 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 818 | 4.5E-52 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1005 | 1.9E-8 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 452 | 5.0E-16 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 357 | 2.9E-96 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 38 | 359 | 9.14E-112 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 455 | 1.28E-24 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1008 | 5.18E-140 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 460 | 8.7E-18 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1008 | 4.4E-32 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 7.5E-99 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 4.9E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 470 | 579 | 3.3E-19 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 404 | 4.6E-30 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 2.5E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_012704498.1 | LOW QUALITY PROTEIN: alpha-mannosidase-like [Setaria italica] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3IMS7 | Alpha-mannosidase OS=Panicum hallii OX=206008 GN=PAHAL_9G343700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology