Basic Information
Locus ID:
CH01.3114
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 31579632 | 31591113 | + | CH01.3114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 112,626.44 Da | 32.23 | 82.88 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 46 | 323 | 9.28606E-173 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 364 | 456 | 4.0E-17 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 609 | 824 | 1.4E-53 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 47 | 359 | 1.9E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 906 | 1011 | 2.3E-8 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 465 | 1014 | 2.04E-146 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 40 | 360 | 8.53E-110 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 458 | 9.48E-25 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 606 | 872 | 2.2E-103 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 407 | 462 | 1.0E-18 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 46 | 327 | 4.7E-118 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 583 | 1.4E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 328 | 406 | 1.1E-28 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 893 | 1014 | 8.0E-32 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 364 | 438 | 2.5E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_039828828.1 | alpha-mannosidase-like [Panicum virgatum] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0MPY8 | Alpha-mannosidase OS=Panicum virgatum OX=38727 GN=PVAP13_9NG361100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology