Basic Information
Locus ID:
CH01.3064
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 30778251 | 30781752 | - | CH01.3064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 123,032.54 Da | 40.68 | 105.73 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 863 | 1131 | 2.91054E-84 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 76 | 9.6E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 154 | 216 | 1.9E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 859 | 1126 | 1.6E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 691 | 747 | 2.3E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 252 | 311 | 1.7E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 839 | 1129 | 1.5E-69 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 232 | 657 | 3.14E-69 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 639 | 754 | 9.52E-23 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 264 | 3.74E-38 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 470 | 560 | 3.66E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 152 | 1.9E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 226 | 2.0E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 391 | 468 | 1.8E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 227 | 390 | 8.9E-53 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 469 | 784 | 1.9E-83 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 819 | 928 | 5.0E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 929 | 1140 | 3.1E-53 | - |
| SMART | SM00220 | serkin_6 | 857 | 1129 | 2.6E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 394 | 418 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 442 | 466 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 202 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 493 | 516 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 203 | 226 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 637 | 660 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 298 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 710 | 734 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 250 | 273 | 150.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 857 | 1136 | 35.792248 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 974 | 986 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 863 | 885 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 710 | 723 | 6.0E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 182 | 195 | 6.0E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 7.45E-69 |
| RefSeq | XP_025791859.1 | leucine-rich repeat receptor-like protein kinase PEPR2 [Panicum hallii] | 1.37E-276 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 7.36E-68 | |
| TrEMBL | A0A2S3IMP7 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G324600 PE=3 SV=1 | 3.1E-275 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |