Basic Information
Locus ID:
CH01.3043
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 30437666 | 30447134 | + | CH01.3043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 105,057.98 Da | 43.91 | 83.67 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 753 | 908 | 1.00902E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 313 | 907 | 3.4E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 41 | 137 | 8.0E-25 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 137 | 4.18E-29 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 910 | 1.61E-112 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 297 | 541 | 7.6E-69 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 237 | 6.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 709 | 916 | 1.6E-57 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 13 | 150 | 2.4E-35 | - |
| SMART | SM00695 | dusp | 37 | 140 | 6.7E-24 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 137 | 19.77984 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 910 | 58.099461 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 852 | 869 | - | IPR018200 |
| Coils | Coil | Coil | 201 | 228 | - | - |
| Coils | Coil | Coil | 20 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_004983358.1 | ubiquitin carboxyl-terminal hydrolase 9 [Setaria italica] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835A5H5 | Ubiquitin carboxyl-terminal hydrolase OS=Digitaria exilis OX=1010633 GN=HU200_062689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology