Basic Information
Locus ID:
CH01.3035
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 30359932 | 30366997 | + | CH01.3035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 124,022.66 Da | 47.43 | 72.90 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04434 | SWIM zinc finger | 956 | 982 | 1.7E-7 | IPR007527 |
| Pfam | PF10551 | MULE transposase domain | 703 | 796 | 1.8E-17 | IPR018289 |
| SMART | SM00575 | 26again6 | 960 | 987 | 9.8E-10 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 953 | 985 | 10.360744 | IPR007527 |
| ProSitePatterns | PS01007 | Transposases, Mutator family, signature. | 768 | 792 | - | IPR001207 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1038 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1101 | - | - |
| Coils | Coil | Coil | 108 | 128 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039804280.1 | uncharacterized protein LOC120668605 isoform X1 [Panicum virgatum] | 7.07E-214 |
| TrEMBL | A0A3L6PS76 | SWIM-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G07340 PE=4 SV=1 | 2.63E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3022, BH09.1174, CH01.3035 |
| Poaceae | Lolium multiflorum | 19 | gene-QYE76_001585, gene-QYE76_001690, gene-QYE76_005059 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026660, Chr03G003120, Chr07G005200, Chr09G014280 ... |