Basic Information
Locus ID:
CH01.3028
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 30294090 | 30296441 | - | CH01.3028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 65,715.17 Da | 38.80 | 87.86 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 40 | 138 | 2.7E-15 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 163 | 245 | 4.1E-7 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 344 | 556 | 1.6E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 318 | 558 | 5.96E-57 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 148 | 248 | 1.2E-11 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 315 | 418 | 1.9E-30 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 33 | 143 | 6.5E-19 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 419 | 604 | 1.2E-33 | - |
| SMART | SM00220 | serkin_6 | 342 | 599 | 1.5E-13 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 149 | 248 | 12.533083 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 34 | 143 | 17.448374 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 342 | 604 | 29.629824 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 466 | 478 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 348 | 371 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.3 | - | 2.48E-60 |
| RefSeq | XP_040384174.1 | cysteine-rich receptor-like protein kinase 8 [Oryza brachyantha] | 4.8E-112 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 2.43E-59 | |
| TrEMBL | A0A5J9SKD3 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55195 PE=4 SV=1 | 2.03E-278 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.601, CH01.3028, CH04.309 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_003593, gene-QYE76_017906, gene-QYE76_019077 ... |
| Poaceae | Oryza coarctata | 1 | Oco09G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g10540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G170900, gene-BS78_08G007300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0106389, Pt_Chr0106422, Pt_Chr0501231, Pt_Chr0604613 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007730, Chr13G017140 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G497600, Tel2E01G092800, Tel2E01G1016400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G628100.1, TraesCS2B02G628200.1 ... |