Basic Information
Locus ID:
CH01.3016
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 29942856 | 29947195 | - | CH01.3016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 65,477.93 Da | 40.66 | 98.04 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 422 | 481 | 2.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 274 | 287 | 0.69 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 238 | 596 | 1.02E-66 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 381 | 603 | 9.2E-65 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 380 | 1.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 26 | 77 | 4.2E-6 | - |
| SMART | SM00369 | LRR_typ_2 | 396 | 420 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 271 | 297 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 347 | 371 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 7.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 444 | 468 | 38.0 | IPR003591 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00500 (Starch and sucrose metabolism)
map00500 (Starch and sucrose metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko02026 (Biofilm formation - Escherichia coli)
map02026 (Biofilm formation - Escherichia coli)
map04217 (Necroptosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29320.1 | Glycosyl transferase, family 35. Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. | 1.65E-7 |
| RefSeq | XP_034570727.1 | leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 [Setaria viridis] | 5.44E-90 |
| P0DL10 | Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays OX=4577 GN=TD1 PE=2 SV=1 | 1.15E-28 | |
| TrEMBL | A0A4U6SYP6 | LRRNT_2 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G284100v2 PE=4 SV=1 | 1.23E-88 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6359 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049210 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1200.V1.1 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020657 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3016, CH06.1251 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043200, gene-BS78_K002900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G890400 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G171600.1.cds1 |