Basic Information
Locus ID:
CH01.2792
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 25258092 | 25259953 | - | CH01.2792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 53,154.88 Da | 43.84 | 78.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 255 | 344 | 1.6E-7 | IPR013187 |
| Pfam | PF00646 | F-box domain | 54 | 91 | 1.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 108 | 3.27E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 54 | 91 | 1.3E-8 | - |
| SMART | SM00256 | fbox_2 | 55 | 94 | 5.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 155 | 343 | 8.8E-30 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 49 | 94 | 10.186324 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43260.1 | F-box and associated interaction domains-containing protein. | 1.99E-24 |
| RefSeq | XP_006662318.2 | F-box/LRR-repeat protein At2g43260-like [Oryza brachyantha] | 9.05E-129 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 1.96E-23 | |
| TrEMBL | A0A3L6S6H8 | F-box/LRR-repeat protein OS=Panicum miliaceum OX=4540 GN=C2845_PM02G15140 PE=4 SV=1 | 2.24E-234 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology